PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010108202.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HSF
Protein Properties Length: 236aa    MW: 27032.5 Da    PI: 9.0625
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010108202.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.61.7e-32461612102
                     HHHHHHHHHCTG........................GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTT CS
    HSF_DNA-bind   2 Flkklyeilede........................elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekks 72 
                     Fl+k+y++le+                         + +++isw+e+gn fvv+ + ef++ +LpkyFkh+nf+SFvRQLn+YgFkk+++++   
  XP_010108202.1  46 FLSKTYNLLEEGgagiimssdhdrsiingeyyagsyKRSSVISWNEEGNGFVVWSPAEFSELLLPKYFKHNNFSSFVRQLNTYGFKKTSSKR--- 137
                     8999999999555666666666777777777777779999************************************************9998... PP

                     TTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
    HSF_DNA-bind  73 kskekiweFkhksFkkgkkellekikrkks 102
                           weFkh++F+kg k++l +i rkk 
  XP_010108202.1 138 ------WEFKHDKFQKGCKHMLVEITRKKC 161
                     ......*********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.6E-3438154IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-3642159IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-2846159IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-2583159IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MAKNEVLELD LNQYYGGGDQ ITSSSTTSST TLSSGQSPMT KSPTPFLSKT YNLLEEGGAG  60
IIMSSDHDRS IINGEYYAGS YKRSSVISWN EEGNGFVVWS PAEFSELLLP KYFKHNNFSS  120
FVRQLNTYGF KKTSSKRWEF KHDKFQKGCK HMLVEITRKK CEPSVFPAFR KASDRDSAAA  180
TEENNRLQLM EENKNLRREK VELQTQIAHF KALEVKLLDC LSHYMGDHHN KFRRLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5x_E1e-158515919104Putative transcription factor
5d5x_B1e-158515919104Putative transcription factor
5d5w_B1e-158515919104Putative transcription factor
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010108202.11e-179Heat stress transcription factor B-2a
TrEMBLW9RZ031e-179W9RZ03_9R
STRINGPOPTR_0004s04260.12e-92(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113572839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.15e-39heat shock transcription factor B2A